PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0001500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 256aa    MW: 28248.4 Da    PI: 9.4944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0001500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11133181348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v ++G g+W+ I r      + Rt  ++k++w+++l
   Spipo4G0001500 133 AWTLWEVTKLVEGVSKYGAGRWSEIKRLAFpsyTQRTSVDLKDKWRNLL 181
                      7***************************988****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.893126185IPR017930Myb domain
SuperFamilySSF466894.26E-16128191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-13128183IPR009057Homeodomain-like
SMARTSM007171.8E-8130183IPR001005SANT/Myb domain
CDDcd116603.89E-19132182No hitNo description
PfamPF002497.2E-9133181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVEGDGTLVP ATDDDVMEVE HMLKDDKKYA PSIESMEKSQ DYASDAVLSS RKSGINSLEG  60
SSLSESSVGS SQKLNARLEN DAFIREDKSA AEASYWSSGQ DVTGASGDDS DDGGDIVLMP  120
KHNGGGRRTH HRAWTLWEVT KLVEGVSKYG AGRWSEIKRL AFPSYTQRTS VDLKDKWRNL  180
LRACFTQRPS DKTSTRRHNS APPIPTWVLA RVRELSQMQQ AHQRIGGFGS SKAARAMARY  240
KYVGPRGQWV SPKTH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455128.12e-43PREDICTED: uncharacterized protein LOC105776772
RefseqXP_016698008.12e-43PREDICTED: uncharacterized protein LOC107913858
RefseqXP_017649156.13e-43PREDICTED: uncharacterized protein LOC108489264 isoform X1
RefseqXP_017649157.13e-43PREDICTED: uncharacterized protein LOC108489264 isoform X1
RefseqXP_017649158.13e-43PREDICTED: uncharacterized protein LOC108489264 isoform X2
TrEMBLA0A1D1XQE93e-49A0A1D1XQE9_9ARAE; Telomere repeat-binding protein 6
STRINGGorai.011G058300.18e-43(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-34TRF-like 6