PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0002100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YA
Protein Properties Length: 191aa    MW: 20751.4 Da    PI: 10.4041
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0002100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.42.4e-3357113158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rakle+++kl  k+rkpylheSRh hA+rR RgsgGrF
  Spipo4G0002100  57 EEPIYVNAKQYQGILRRRQQRAKLEAQNKL-LKGRKPYLHESRHLHAMRRVRGSGGRF 113
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3655116IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.30856116IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-2858113IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-245981IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606181IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.1E-2490113IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKSASSLSTD VEATGLFPYT HVDACYMGSL AGCGPHSMIV RTGQPVRAPL PLSLPGEEPI  60
YVNAKQYQGI LRRRQQRAKL EAQNKLLKGR KPYLHESRHL HAMRRVRGSG GRFLNTKKEQ  120
QNEDQQQMSS PTAAAAAAAA MEVSSPSLFQ ITRQGWNSDP KSLWSDNTSA GPSISTSSDI  180
TNISEGGLRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2257131272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261977.14e-43PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A1D1XF434e-48A0A1D1XF43_9ARAE; Nuclear transcription factor Y subunit A-3
TrEMBLA0A1D1YHY13e-48A0A1D1YHY1_9ARAE; Nuclear transcription factor Y subunit A-3
STRINGXP_010261975.14e-41(Nelumbo nucifera)
STRINGGSMUA_Achr8P30700_0012e-41(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.16e-39nuclear factor Y, subunit A6