PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0017100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 243aa    MW: 26304.5 Da    PI: 8.2968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0017100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-133077254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + +h+e+Er+RR+riN+ +++Lr+llP+       +++K + L+++v+ I++L
  Spipo4G0017100 30 CNSHSEAERKRRQRINHQLSRLRQLLPHT-----SRMDKGALLTEVVREIRDL 77
                    679*************************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-102779No hitNo description
PROSITE profilePS5088814.7042877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-103077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-113283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-123285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-93483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.566119196IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRQTTGDGGG TLPPLTSAFP EAAVRVERAC NSHSEAERKR RQRINHQLSR LRQLLPHTSR  60
MDKGALLTEV VREIRDLRRR AADAVGVNEA CCGHSFPGEE DEVLLDCGGD GESGRRTATA  120
SFCCQDRSGL FRDVGEAIRS SKIRPARVEM ATVGGRTKAV LVVDPQSTAE GGGEQQLSAL  180
LAALRSVVEE VPGGGRATAA AKRMRSLQRD ERDRDEMTEL ASFPTGKRYA RLNNEADICF  240
NG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664394.17e-43PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_010664396.16e-43PREDICTED: transcription factor bHLH30 isoform X2
RefseqXP_010664397.16e-43PREDICTED: transcription factor bHLH30 isoform X2
TrEMBLA0A438G0212e-41A0A438G021_VITVI; Transcription factor bHLH30
TrEMBLF6H1252e-41F6H125_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07410.t013e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-28basic helix-loop-helix 32