PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0018300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 226aa MW: 25237.7 Da PI: 6.2899

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0018300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	13	46	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k rr+++NReAAr+sR++Kka+i++Le +L Spipo4G0018300 13 KMLRRLAQNREAARKSRLKKKAYIQQLESTRTKL 46 6789***********************9755555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0026	7	80	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.818	11	57	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-7	13	53	No hit	No description
Pfam	PF00170	6.5E-9	13	47	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-8	14	55	No hit	No description
PROSITE pattern	PS00036	0	16	31	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-32	98	167	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
EGYMLGTRPL NYKMLRRLAQ NREAARKSRL KKKAYIQQLE STRTKLAQIE SELENGIYRG 60 GCSGDSAYGL SATMDSGLAA FEMEYGHWVE EQNKYRCELR AALQAHVSEI ELRILVESVM 120 SHYDELFRIK AAAAKADIFY LMSGMWKTSA ERCFLWIGGF RPSELLKQSS QQAEDALSQG 180 IDRLQQTLAE SLTSDPLGAG STPPVDNLTE QISAAVGKLE ALVNFV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905949.1	1e-107	transcription factor TGA4 isoform X2
Swissprot	Q39237	8e-87	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2H3YN91	1e-104	A0A2H3YN91_PHODC; transcription factor TGAL6-like isoform X5
STRING	XP_008801018.1	1e-104	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.6	6e-90	bZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo4G0018300

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]