PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0037700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 542aa    MW: 60877.6 Da    PI: 5.8879
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0037700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.31.1e-25196249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Spipo4G0037700 196 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMDVPGLTRENVASHLQKYRL 249
                     68*******************.9*******************************8 PP
2Response_reg82.31.6e-27171251109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev++++ ++ al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Spipo4G0037700  17 VLVVDDDPTWLKILEKMLRKCSY-EVTTCSLARVALDLLRERKdwFDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGIQHG 109
                     89*********************.***************888888**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  Spipo4G0037700 110 ACDYLLKPVRMKELRN 125
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-4414151No hitNo description
SuperFamilySSF521728.97E-3614146IPR011006CheY-like superfamily
SMARTSM004481.4E-3215127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75516131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2417126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.81E-3018131No hitNo description
SuperFamilySSF466897.79E-18193253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28195254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22196249IPR006447Myb domain, plants
PfamPF002494.0E-7198248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MENSSSRDES FPAGLRVLVV DDDPTWLKIL EKMLRKCSYE VTTCSLARVA LDLLRERKDW  60
FDIVISDVNM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS RVMKGIQHGA CDYLLKPVRM  120
KELRNIWQHV FRKKIHEVRE TENYDSYEDN NIRSRLDELD ENLVFNGAFH SSKKRKDNHY  180
REHMEQSFGD SVAVKKARVV WSVDLHQKFV NAVNQIGFDK VGPKKILDLM DVPGLTRENV  240
ASHLQKYRLY LSRLQKQNEE KTLGGAAQTD LNAKEPPGVL SQQSSLARQP KSSPSGYGFS  300
STRIYTQDMI PKIAAFRATE TELASNDEAR VSPKKGNITR FGLMASKNLE PWGDGGNQLT  360
QFVQFMKGQQ SVSVKDLLQF RQAGQDHRFE HDHAQSPHIV NLRGSIEAEG TSPSVQMKPA  420
DSKEGKYMLL KCGLDSGSSQ ISHGFVNAHS FQPASITNLS CGNPCSSDDK NSIGSWSSLY  480
SDAEAPPSID SLTFPLHGLG AFECNQIASD FQSILYDELQ YNCEYLSDFF EAPMVDDGLF  540
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17193254263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932292.11e-163two-component response regulator ORR26
SwissprotQ5N6V81e-150ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2H3YDP81e-156A0A2H3YDP8_PHODC; Two-component response regulator
STRINGXP_008797265.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-115response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]