PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0043700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 197aa    MW: 21649.3 Da    PI: 9.2999
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0043700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.51.2e-2529115287
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                     +++r+w+eeDe++lL G++df+ak+g  +p    d+fyef++  +++++sk+ + +K+rrLK+K+  + +++ +g++p+ +k+hd+ 
  Spipo4G0043700  29 ASKRVWNEEDEVTLLIGMVDFQAKHGGaDPAVAFDDFYEFIRLTLHAEFSKTKIYKKVRRLKQKYMANLSRSMQGDDPASAKSHDRA 115
                     579******************99987659999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-2231115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTHPSSTADA GERSAATVAA GGNASSTEAS KRVWNEEDEV TLLIGMVDFQ AKHGGADPAV  60
AFDDFYEFIR LTLHAEFSKT KIYKKVRRLK QKYMANLSRS MQGDDPASAK SHDRAKSGAP  120
MNPVAPLHSD GRHKHLDFDA AAQGNAKKRR HKVRVSAAAI DVSRFKHHVA GYRLLLEQEL  180
LEKQIIEYLF DADDSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151KKRRHK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.19e-18DNA-binding storekeeper protein-related transcriptional regulator