PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0044300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 188aa    MW: 21059.8 Da    PI: 12.4195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0044300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00011981341354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +++ s+ eeLr+llP a     ++++  + L ++v+YI++L
  Spipo4G0044300  98 LRDVGSRAEELRRLLPGA-----GRMEFGSLLDETVNYIHHL 134
                     566777889********9.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.06785134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-495148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-795157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MHREASAGNP NPSRHLQALH FLRALARINK LRARKSPPSP RATARGGRRI ARAAYAAMAL  60
AAGPRKAWSR AILLGLRRNS ITKPFPVKKK ILKPRRKLRD VGSRAEELRR LLPGAGRMEF  120
GSLLDETVNY IHHLTAQVGL MQKIADSLFY QLGSCRTTML SRWYVWIAPI VGANRFVRRF  180
DFSAVAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298KPRRKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZJ051e-29A0A1D1ZJ05_9ARAE; Transcription factor bHLH87