PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0049200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 185aa    MW: 21091.8 Da    PI: 10.2135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0049200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.9e-1168109351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Spipo4G0049200  68 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 109
                     79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.75545122IPR001471AP2/ERF domain
SMARTSM003804.3E-467124IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-868112IPR016177DNA-binding domain
PfamPF008471.7E-568110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-669114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVKRKKGGVL FVPRVQVDVS EAFPASVDVS SSSYKKEEPA LQEYQVPGVK RRKRHRRKHV  60
ENQEPCTMRG VYFKNMKWQA AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS  120
EEEKQELRQF KWEEFLEMTR RAISSKKHQR RAGSGPRRKA GTQPQSDGED ARAASASDDV  180
DGDR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161297.11e-71PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161301.11e-71PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161307.11e-71PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP94e-46ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1D1YB759e-93A0A1D1YB75_9ARAE; Ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_010242670.12e-66(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.16e-48ERF family protein