PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0049400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 320aa    MW: 34536 Da    PI: 5.0144
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0049400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.2e-161158350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    i +  +r+ tf+kR++g+ KKA EL +LCd+  +v+  +++g+l  ++
  Spipo4G0049400 11 IADRKRRNATFAKRKAGLKKKAAELATLCDVPTLVLCCGPDGQLDVWP 58
                    88999***************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.544161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-9159IPR002100Transcription factor, MADS-box
CDDcd002662.17E-20383No hitNo description
PRINTSPR004042.7E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19594IPR002100Transcription factor, MADS-box
PfamPF003192.9E-151156IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVRCRPSLEL IADRKRRNAT FAKRKAGLKK KAAELATLCD VPTLVLCCGP DGQLDVWPED  60
RRQVLDVISR YYSAAAEDRR KRSYDVSSFL GDRVMKETAT AEWEGKNGDL PSPWNFLEQV  120
RGLPLPEMEK RLDGMLKKIE ERMARLRSDL RPNGAEIDGR RRPQDETSEN TGGCLVAGQT  180
SRLFRDLELS TLQDFFIQGG EAAPPCALAT YAAAGFPAAY LCAPIAGNSY PDGGAAVGFP  240
SLASPETALM AACWSPGGGW GGHPSDGGEI PSRGEIYEDL QKEFLGGGVD IGGSDFFPDL  300
PSAAPLAVDS SRLFFGHSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39750.15e-09AGAMOUS-like 81