PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0054700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23770.3 Da    PI: 9.5537
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0054700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.1e-252372251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien+snrq+tfskRrng+lKKA ELS+LC++ev ++ifs tgk y yss
  Spipo4G0054700 23 RIENTSNRQITFSKRRNGLLKKACELSILCEVEVGLLIFSATGKSYQYSS 72
                    8***********************************************96 PP
2K-box79.49e-271111941497
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +++++e++kL k +e+L+  q+h+ Ge+L sL ++e +qLe+q++ +l +iRs+K +++ e+i+ l+kk+kelqeen +L+++
  Spipo4G0054700 111 LQYWRTEIDKLTKVVESLEARQKHFAGEELLSLGIREVKQLERQMKIGLDRIRSRKRKIISEHISSLKKKQKELQEENAYLHRR 194
                     699******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-351473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.8431474IPR002100Transcription factor, MADS-box
CDDcd002656.03E-311572No hitNo description
SuperFamilySSF554554.58E-261577IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-271636IPR002100Transcription factor, MADS-box
PfamPF003191.1E-232370IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-273651IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-275172IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.89111202IPR002487Transcription factor, K-box
PfamPF014863.1E-23112194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGMVPEGPSR ACDMGRGKVQ LRRIENTSNR QITFSKRRNG LLKKACELSI LCEVEVGLLI  60
FSATGKSYQY SSHESVNLPN PSLTSPESSS LSLSLDLSLS LPPLDYGQYY LQYWRTEIDK  120
LTKVVESLEA RQKHFAGEEL LSLGIREVKQ LERQMKIGLD RIRSRKRKII SEHISSLKKK  180
QKELQEENAY LHRRETDMAC GLVIREDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-181474161MEF2C
5f28_B5e-181474161MEF2C
5f28_C5e-181474161MEF2C
5f28_D5e-181474161MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709013.12e-63PREDICTED: MADS-box transcription factor 23-like isoform X2
TrEMBLA0A1D1XEZ78e-69A0A1D1XEZ7_9ARAE; Floral homeotic protein APETALA 1
STRINGGorai.007G043400.13e-61(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4174523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-29MIKC_MADS family protein