PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0054800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MIKC_MADS

Protein Properties

Length: 157aa MW: 17141.5 Da PI: 8.2447

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0054800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.2	5e-24	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ +r v+fskRr g+lKKA EL vLCdaev v++fs++gkl +ss Spipo4G0054800 10 RIDDGARRMVSFSKRRSGLLKKARELAVLCDAEVGVVVFSPKGKLSHFSS 59 89*********************************************996 PP
2	K-box	21.2	1.2e-08	59	106	34	81
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 +q +ll ++L + +++eL +Le+++e l+kiR +K+ ll+++ +lq Spipo4G0054800 59 SQSRLLDDGLIEHDINELTKLEDKVECELRKIRLRKTALLKDSGANLQ 106 56777888899999***************************9988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.0E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.955	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-23	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-24	3	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MVRGKVKLQR IDDGARRMVS FSKRRSGLLK KARELAVLCD AEVGVVVFSP KGKLSHFSSQ 60 SRLLDDGLIE HDINELTKLE DKVECELRKI RLRKTALLKD SGANLQDPVM VTDGEGTDEE 120 DEHRSSQRAP ESGASSSSNA ASPPGPLRTL QLFVDA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014622593.1	2e-27	agamous-like MADS-box protein AGL16 isoform X7
Swissprot	Q9SZJ6	1e-22	AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBL	A0A1D1XXJ4	1e-31	A0A1D1XXJ4_9ARAE; MADS-box transcription factor 56
STRING	Bra029424.1-P	6e-29	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-24	AGAMOUS-like 21

Link Out ? help Back to Top
Phytozome	Spipo4G0054800

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yu LH, et al. Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression. Mol Plant, 2017. 10(6): p. 834-845 [PMID:28438576] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Sun CH, et al. Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis. Plant Sci., 2018. 266: p. 27-36 [PMID:29241564]