PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0056400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 253aa    MW: 28514.3 Da    PI: 9.3923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0056400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-0595117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++F+++ +L  H +  H
  Spipo4G0056400  95 SCSVCSRVFPTSRLLSIHVSEaH 117
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.486792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003551.494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003551.9132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEVEVKEDGG LGFPHWVACL RKIGPHDPFF TSGNAERELL AKQLTLDLTE DERFQLQSME  60
DAEGEGVFCP IVGCGARLKS LNDFEDHYNA RHTASCSVCS RVFPTSRLLS IHVSEAHDSF  120
FQAKVARGFP MFECLVEGCG VKLKSYQSRL QHLVDKHKFP ASFQFSRKAN PSKRRRQKRH  180
PKQATQRRAE RGETRMAVDE QMDDLVSAVS KLSTSNSAPS SISFGHRHAR GFQFLPRSVE  240
RRTKPAPPAD TKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270554.11e-123PREDICTED: zinc finger protein 511
TrEMBLA0A1D1YG591e-125A0A1D1YG59_9ARAE; Zinc finger protein 511 (Fragment)
STRINGVIT_14s0068g01930.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-101zinc ion binding;nucleic acid binding;zinc ion binding