PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0066500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 165aa    MW: 18740.9 Da    PI: 9.9292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0066500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+l+  v  +++ +W++++++ g+ R++k+c++rw +yl
   Spipo4G0066500 16 KGPWTHEEDEKLKAFVLAHPSTSWRLVPQKAGLIRCGKSCRLRWMNYL 63
                     79********************************************97 PP
2Myb_DNA-binding49.21.2e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+el+++++   G++ W+ Ia+ ++ gRt++++k+ w++
   Spipo4G0066500  69 RGNFTQEEEELIIQLHSAVGNK-WSVIAAQLP-GRTDNEIKNLWNT 112
                      89********************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9761163IPR017930Myb domain
SuperFamilySSF466896.36E-2913110IPR009057Homeodomain-like
SMARTSM007171.9E-101565IPR001005SANT/Myb domain
PfamPF002491.7E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-231770IPR009057Homeodomain-like
CDDcd001674.82E-91863No hitNo description
PROSITE profilePS5129423.77964118IPR017930Myb domain
SMARTSM007172.8E-1368116IPR001005SANT/Myb domain
PfamPF002493.1E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2671117IPR009057Homeodomain-like
CDDcd001673.63E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRAPCCNGE HAGLKKGPWT HEEDEKLKAF VLAHPSTSWR LVPQKAGLIR CGKSCRLRWM  60
NYLRPDIRRG NFTQEEEELI IQLHSAVGNK WSVIAAQLPG RTDNEIKNLW NTKLRKILVL  120
KGINPMTHQP LCNPLLSDYV KQCLRSIEHM LISRFVGPPP LTGGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141165106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596793.11e-62transcription factor MYB102-like
SwissprotQ9LDR85e-60MY102_ARATH; Transcription factor MYB102
TrEMBLA0A443N0L79e-91A0A443N0L7_9MAGN; Transcription factor MYB41-like protein
STRINGcassava4.1_028193m5e-62(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-62MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]