PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0067600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 358aa    MW: 37225.3 Da    PI: 7.1828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0067600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12299344655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L +l+P+     +k  + a++L +Av+YIk Lq
  Spipo4G0067600 299 SIAERERRTRISEKLRKLEDLVPNV----DKQTNTADMLDLAVQYIKTLQ 344
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.392293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14296349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12297348No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-12299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MHPSGSGKPR GVYPGPVGLT RFGSAPSSLL ATLVDSVGAA SGRGAGGGGE NSFSPAPAGN  60
MVGRFFSDDS PCLTSESSCK ASGGGAASPD LDPAGVYNKR KAPGLGLERS YGLDNIALGD  120
LGMGVGGGSG LRSGPSHLIR HSSSPARFLS HLMVDDGFSA GRRESYSHGG AEAAGGRRLK  180
SQLSFSSRQD SLSQISELSM PDVGETNSSD EATAGTVGQS FISSGLPIGA WDESNSIVFS  240
GKGPEDSDRD IIATLGSLDS NQFGLPKASL EMEKLFRIHQ DSVPCKIRAK RGCATHPRSI  300
AERERRTRIS EKLRKLEDLV PNVDKQTNTA DMLDLAVQYI KTLQSQLQGG RRAGEDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930149.11e-107transcription factor bHLH129 isoform X1
TrEMBLA0A2H3XHG11e-103A0A2H3XHG1_PHODC; transcription factor bHLH129-like isoform X1
STRINGXP_008783787.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-51bHLH family protein