PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0074800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 607aa    MW: 67044.8 Da    PI: 5.6726
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0074800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+       +++++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + ++
  Spipo4G0074800 125 FCKTLTASDTSTHGGFSVLRRHADEClppldmTQQPPC-QDLVATDLHGNEWPFRHIFRGQPRRHLLTTGWSAFVSSKRLVAGDAFIFL--RGEN 216
                     99*****************************7555556.59************************************************..4499 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +el+v+v+r
  Spipo4G0074800 217 GELRVGVRR 225
                     99*****97 PP
2Auxin_resp112.34.6e-37251333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt++gv d+ ++rW +S+Wrs+k
  Spipo4G0074800 251 ASHAVSTGTIFSVFYKPRTSRSEFIVSLNKYLEAKQHKLSVGMRFKMRFEGEEAPERRFSGTIIGVGDSISSRWVDSEWRSIK 333
                     789*****************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-42110254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-40121237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-22123225No hitNo description
PfamPF023626.0E-21125225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561125227IPR003340B3 DNA binding domain
SMARTSM010198.1E-22125227IPR003340B3 DNA binding domain
PfamPF065071.5E-34251333IPR010525Auxin response factor
PROSITE profilePS5174524.346483565IPR000270PB1 domain
SuperFamilySSF542773.79E-10485560No hitNo description
PfamPF023093.6E-7530574IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MALTRANPKS YGQGVSGGVL YKELWHACAG PLVSVPREGE RVYYFPQGHM EQLEASTNQG  60
LDQKIPLFDL PFKILCRVVH VELQAEQETD EVFARITLQP EADQSEVTSL DPQLPEVERC  120
KAHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMTQQP PCQDLVATDL HGNEWPFRHI  180
FRGQPRRHLL TTGWSAFVSS KRLVAGDAFI FLRGENGELR VGVRRLMRQS TNMPASIISG  240
PSMHIGVLAT ASHAVSTGTI FSVFYKPRTS RSEFIVSLNK YLEAKQHKLS VGMRFKMRFE  300
GEEAPERRFS GTIIGVGDSI SSRWVDSEWR SIKVQWDEPS AIPRPERVSP WELEPLVANS  360
PVSQPATRNK RARQPILPPL TPELPAIFAS REDSFSICVN KEPCERKPET GNGCRLFGIQ  420
LVEGSVPEET SPLAAVPVGA AAESDQLSQP SNATASDVPA RSSGDPDKSC LRSQHETQTR  480
PVRSCTKVLL QGMAVGRAVD LTRFEGYDDF LLKIEEMFGI QGELAGPSRK WQVVYTDDED  540
DMMLVGDEPW PEFCAIVRKI YIYTEEEARR LAPKLKLPTT GDAAGPPAAG EGGDDGHSDP  600
ADPSDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01436013359Auxin response factor 1
4ldw_A0.01436013359Auxin response factor 1
4ldw_B0.01436013359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795277.10.0auxin response factor 7-like isoform X2
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A1D1XYX70.0A0A1D1XYX7_9ARAE; Auxin response factor
STRINGXP_008795276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]