PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0076500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 675aa    MW: 77247 Da    PI: 7.7959
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0076500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1644.1e-2063156190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+e+A+++GFs+r+++++ +    +  t+r fvC + g++  +  ++ k +r+r+++r+gC+a l+++k +     +w+vt + ++HnHel 
  Spipo4G0076500  63 DFYREFARQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAPSEAKPQRNRKSSRCGCQAYLRISKCTdsgAPEWRVTGFANHHNHELL 156
                     6**************9998877356667999***********9999999999*******************99756679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1663156IPR004330FAR1 DNA binding domain
PfamPF105514.0E-22278369IPR018289MULE transposase domain
PROSITE profilePS509669.557556591IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-5566593IPR006564Zinc finger, PMZ-type
PfamPF044342.5E-7566590IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
SMSDGVRSVL EAYDDPSEHR SLSLDDSSSA EESPEDTKLS LETSNDLFPY IGQRFLTHDD  60
AYDFYREFAR QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKAPS EAKPQRNRKS  120
SRCGCQAYLR ISKCTDSGAP EWRVTGFANH HNHELLEAHQ VRFLPAYRAI SETDRNRIIM  180
FAKSGISVQQ MMRVMELEKC VEPGYLPFTE KDVRNLIQTF RRMEQSEESI SLLRMCRNIY  240
DKDPSFRYEF TLDANNRLEN IAWSYASSVQ SYDVFGDVVV FDTTHRLTAF NMPLGIWIGV  300
NNYGMPCLFG CVLLREETVE SFSWALKAFL RFMNGRAPQT ILTDQNMCLK EAIPNEMPHS  360
KHALCIWLLV AKFPSWFNAI LGERYNEWKA EFYRLYNMEN VNDFELGWRE MVNSFGLHSN  420
RHIANLYAFR NLWALPYLRS HFFAGMTLPG VSKSINSFIQ RFLSAQARLA HSIEQAAVTV  480
DFKDQAAEQQ IMQQNLQNIC LKTSAPMESH AAAVLTPYAF FKLQDELVMA AHYASFQMED  540
GSFLVRHHTK LDGGRKVIWV PRDQGLACSC HMFELSGILC RHALRVLSTV NCFQIPEQYL  600
PLRWRRVNSI PPKQASGVDQ VQILKSLVSA LMAEAAKSKE RLDTASEEIS ALLSRIREQP  660
VSSHRPKDTT PESC*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017695983.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1D1Y0M50.0A0A1D1Y0M5_9ARAE; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_008776582.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]