PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0080800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

ZF-HD

Protein Properties

Length: 181aa MW: 20216.3 Da PI: 9.4563

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0080800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	47.1	5.6e-15	1	31	29	60
ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRreveee 60 mps geegt +alkCaACgCHRnFHR+e e e Spipo4G0080800 1 MPS-GEEGTLEALKCAACGCHRNFHRKEAEGE 31 566.899*********************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.3E-13	1	28	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-10	1	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	12.007	1	27	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.45E-21	99	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-32	107	173	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.0E-29	112	168	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MPSGEEGTLE ALKCAACGCH RNFHRKEAEG EAAASCDIYP YYHHLKGRRI IGQKGVLISG 60 AEAYGYSPAG NSLIPRPSPH HMIMPLGALQ TSESEEMEGG IGGGFSRAPP VKKRFRTKFT 120 PEQKEKMLDF AEKVGWRLQK QEESMVQQFC QEIGVKRRVL KVWMHNNKHN LAKKIPLQLE 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	113	170	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930367.1	1e-103	zinc-finger homeodomain protein 4
Swissprot	Q9M9S0	2e-55	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A2H3Z6U7	1e-100	A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRING	XP_008808961.1	1e-101	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	9e-54	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Spipo4G0080800