PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0084000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 230aa MW: 24623.7 Da PI: 8.1626

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0084000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	7.1e-44	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp +qp+kfa vhk+FGasnv+kll++l + +reda++sl+yeAe+r+rdPvyG+vgvi+ lq+ql+ql+ +l Spipo4G0084000 20 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFAHVHKVFGASNVTKLLNELTPYQREDAVNSLAYEAEMRLRDPVYGCVGVISILQHQLRQLEMDLT 114 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e Spipo4G0084000 115 CAKSE 119 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.984	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTTSSSAGTP VTSTSSTSSP CAACKFLRRK CQPDCVFAPY FPPDQPQKFA HVHKVFGASN 60 VTKLLNELTP YQREDAVNSL AYEAEMRLRD PVYGCVGVIS ILQHQLRQLE MDLTCAKSEL 120 SKYQATTTTT LGHGLLNVNI NHPIGIGGIG LGREQFFSAA PAREHHHHHH HMGARTYDAD 180 MGGRLGGSGS YDTGFMAGMN MSAGLGALGS QFNKPRTAGG DERQTIGPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-55	13	123	4	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-55	13	123	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927922.1	1e-104	LOB domain-containing protein 6
Swissprot	A2WXT0	2e-78	LBD6_ORYSI; LOB domain-containing protein 6
Swissprot	Q8LQH4	2e-78	LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBL	A0A1D1YBI8	1e-111	A0A1D1YBI8_9ARAE; LOB domain-containing protein 6
STRING	XP_008807271.1	1e-100	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	5e-66	LBD family protein

Link Out ? help Back to Top
Phytozome	Spipo4G0084000

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]