PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0096100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 199aa    MW: 22120.7 Da    PI: 5.278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0096100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.29.1e-3881251128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelvv++L++k+++ ++   +vi+++d+ +++PwdL+ k+ ++ ++wyfFs+r+         +r+ +sgyW  tg +k+v+s 
  Spipo4G0096100   8 LPPGFRFFPSDEELVVHFLRRKAAHLPCYP-DVIPSLDLRHYDPWDLNGKALSGGNQWYFFSRRAL--------SRVWASGYWTPTGVEKPVTS- 92 
                     79*************************888.99**************97777899*******9865........69999***************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g++vg+kk L+fy g+ap g kt+Wvmhey+l
  Spipo4G0096100  93 AGRNVGIKKYLAFYAGQAPVGIKTNWVMHEYHL 125
                     9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-477161IPR003441NAC domain
PROSITE profilePS5100543.6878163IPR003441NAC domain
PfamPF023656.8E-239125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGNGAGDLPP GFRFFPSDEE LVVHFLRRKA AHLPCYPDVI PSLDLRHYDP WDLNGKALSG  60
GNQWYFFSRR ALSRVWASGY WTPTGVEKPV TSAGRNVGIK KYLAFYAGQA PVGIKTNWVM  120
HEYHLLDCPG GTSADNRGRR PPRNGGNPEA DFNEWVLGRV YESDCGSQSS FYDDGTELSC  180
LDEVFLSLDD LDEISLPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-42816920174NAC domain-containing protein 19
3swm_B3e-42816920174NAC domain-containing protein 19
3swm_C3e-42816920174NAC domain-containing protein 19
3swm_D3e-42816920174NAC domain-containing protein 19
3swp_A3e-42816920174NAC domain-containing protein 19
3swp_B3e-42816920174NAC domain-containing protein 19
3swp_C3e-42816920174NAC domain-containing protein 19
3swp_D3e-42816920174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107570.11e-88NAC domain-containing protein 104-like
SwissprotQ8GWK62e-69NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1D1YHZ26e-93A0A1D1YHZ2_9ARAE; NAC domain-containing protein 55 (Fragment)
STRINGMLOC_15681.27e-80(Hordeum vulgare)
STRINGLPERR02G16450.17e-80(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-71xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]