PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0112900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 250aa    MW: 27121.4 Da    PI: 10.3015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0112900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-203786255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Spipo4G0112900 37 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 86
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-223795IPR016177DNA-binding domain
PfamPF008471.5E-133786IPR001471AP2/ERF domain
PROSITE profilePS5103225.7783794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-333795IPR001471AP2/ERF domain
SMARTSM003803.5E-3637100IPR001471AP2/ERF domain
PRINTSPR003676.5E-123849IPR001471AP2/ERF domain
CDDcd000184.13E-154596No hitNo description
PRINTSPR003676.5E-126076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEPSTGVRMS MSSSGSESTV SGSSHSSYPA AERGGRRYRG VRQRPWGKWA AEIRDPHKAA  60
RVWLGTFETA EAAARAYDEA ALRFRGKRAK LNFPENVRLR PPGPVPPGSF LIPQNTPAAL  120
MTTASQTAAL PFTGFPATDM GDYLEYSRIL QGPGDLQRQP VSLLDQILYS PSPPLGSSPP  180
MADTSAPPSS SSSFPLLYAE HQRRRQQQLR QLQLQQHRQL GYTAPPEHQG DSGGLDFLPG  240
GFPPRPPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-243597366ATERF1
3gcc_A3e-243597366ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053182e-53AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149612e-53AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-53CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408302.28e-49PREDICTED: ethylene-responsive transcription factor ERF037-like
TrEMBLA0A2I0W4W13e-43A0A2I0W4W1_9ASPA; Ethylene-responsive transcription factor ERF114
TrEMBLA0A444CBX53e-43A0A444CBX5_ENSVE; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr8P08000_0012e-43(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-16related to AP2 6