PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0113500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25554.1 Da    PI: 8.4652
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0113500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kR+ngi+KKA+E+SvLC+a+v +++fss+gk+ e++s
  Spipo4G0113500  9 KRIENSTNRQVTFTKRKNGIIKKAKEISVLCNAQVYLVLFSSSGKMAEFCS 59
                    79***********************************************96 PP
2K-box51.54.4e-1872133263
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 
                     qk++g++ ++ak+e+l+ e++++kke++++q e+R+l+Ged+ +Ls  eL  Le  L+++l 
  Spipo4G0113500  72 QKYTGNRIWDAKHERLNAEIDQIKKENDSMQIELRRLKGEDIAPLSPYELIPLEATLQRGLD 133
                     7889999*****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.67161IPR002100Transcription factor, MADS-box
CDDcd002651.13E-35280No hitNo description
SuperFamilySSF554551.44E-33296IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1083171IPR002487Transcription factor, K-box
PROSITE profilePS5129711.19584181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FTKRKNGIIK KAKEISVLCN AQVYLVLFSS SGKMAEFCSD  60
NTTLSRMLEQ HQKYTGNRIW DAKHERLNAE IDQIKKENDS MQIELRRLKG EDIAPLSPYE  120
LIPLEATLQR GLDSPLEFEE TNPDAPFSSQ MEFLKKLKKN ERLLEAENKE LGMILEEHGG  180
ASRGGLRELH QYHRHPQESS YSFQTPFSFC GQPIRRGLDE GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-17175173MEF2 CHIMERA
6byy_B4e-17175173MEF2 CHIMERA
6byy_C4e-17175173MEF2 CHIMERA
6byy_D4e-17175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573549.12e-82MADS-box transcription factor 2
SwissprotQ0HA257e-74MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1U8VH378e-96A0A1U8VH37_ANTAD; B-type MADS-box protein PI-1
STRINGXP_008783315.12e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]