PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0003700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WRKY

Protein Properties

Length: 289aa MW: 31703.1 Da PI: 9.9426

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0003700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.6	2e-31	201	257	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeH+h Spipo5G0003700 201 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERALEDPSMLIVTYEGEHTH 257 9***********************998*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.9E-15	157	197	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-32	188	257	IPR003657	WRKY domain
PROSITE profile	PS50811	29.539	194	260	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	197	257	IPR003657	WRKY domain
SMART	SM00774	6.6E-38	199	259	IPR003657	WRKY domain
Pfam	PF03106	4.6E-27	201	257	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAVDLMGYSR MEEDAAVIQE AAAAGFRSAE LLVFQLSHQR QQEQEQEQQP PDFREIADFA 60 VGKFKKVISM LSRTGRARFR SGPVGDRAPP PPTSVTIDFS KPSPVINADG FTLSQPMSSA 120 SPSFMTSLTG DGSLSTGKLG SALFAGRPPL SSDLKKKRHA HIHCDTVSGG RCHCSKKKRH 180 RVKKVIRVPA ISSKIADIPP DEYSWRKYGQ KPIKGSPYPR GYYKCSSLRG CPARKHVERA 240 LEDPSMLIVT YEGEHTHVGA RGRDWEQEED SGGVLRRCML ASAQPAHV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	187	257	2	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU665445	1e-51	EU665445.1 Triticum aestivum WRKY20 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929316.1	1e-112	WRKY transcription factor WRKY51
Swissprot	Q9SV15	1e-86	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A438DKZ4	1e-104	A0A438DKZ4_VITVI; Putative WRKY transcription factor 11
TrEMBL	A0A438I774	1e-104	A0A438I774_VITVI; Putative WRKY transcription factor 11
TrEMBL	B2G283	1e-104	B2G283_9ROSI; DNA-binding protein
TrEMBL	F6H9I7	1e-104	F6H9I7_VITVI; Uncharacterized protein
STRING	VIT_04s0069g00920.t01	1e-105	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-73	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Spipo5G0003700

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]