PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0004000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 149aa    MW: 17184.7 Da    PI: 10.5171
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0004000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.2e-12851122956
                     HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  29 ereeLAkklgLterqVkvWFqNrRakek 56 
                     +++eLA+ l+L  rqV vWFqNrRa+ k
  Spipo5G0004000  85 QKQELADLLNLRPRQVEVWFQNRRARTK 112
                     79************************98 PP
2HD-ZIP_I/II79.84.2e-26831462689
     HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     + +K+ela  L+l+prqv+vWFqnrRARtk+kq E d+e+Lk+ +++l+een++L+++ +eLr+
  Spipo5G0004000  83 TMQKQELADLLNLRPRQVEVWFQNRRARTKLKQKELDCEFLKKYCESLREENRQLREQLQELRS 146
                     469***********************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002477118IPR001356Homeobox domain
SuperFamilySSF466891.07E-1084116IPR009057Homeodomain-like
PfamPF000461.2E-985112IPR001356Homeobox domain
CDDcd000863.19E-785115No hitNo description
Gene3DG3DSA:1.10.10.609.1E-1185112IPR009057Homeodomain-like
PROSITE profilePS5007112.29385114IPR001356Homeobox domain
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
SMARTSM003402.0E-4114148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGGQEPFDTR LALGVGGDAD VLVARKRKRP MQFHILLPSH TAEEPGRSWR EDQGPGRLML  60
RGDAGDKSTD ADGTGTRKKL RLTMQKQELA DLLNLRPRQV EVWFQNRRAR TKLKQKELDC  120
EFLKKYCESL REENRQLREQ LQELRSVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581TRKKLRL
2106114RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660422.12e-30homeobox-leucine zipper protein HAT9-like
SwissprotP466045e-27HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A443N9U46e-33A0A443N9U4_9MAGN; Homeobox domain-containing protein
STRINGXP_009592889.13e-28(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-22HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]