PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0004100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 18291.8 Da PI: 6.5129

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0004100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.5e-10	40	91	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +k+ ++t+e Le++F+ +++++ ++++eLA++l+L rq+ vW + +R+ Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVWNKLKRM 91 788899****************************************777776 PP
2	HD-ZIP_I/II	64.1	3.4e-21	40	124	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl++e +++LE+ F+++++++++ K ela +L+l+prq++vW k+k++E++ye +k+++++l+ en++L++e +++r+ ++ Spipo5G0004100 40 KKKLRLTREHSAMLERVFRTQSTITNTMKRELADRLNLHPRQIEVW-------NKLKRMEVNYELMKKCFERLSCENQQLKEELKKMRSMIT 124 59******************************************.......589*****************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-10	29	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.89E-9	31	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.823	36	96	IPR001356	Homeobox domain
SMART	SM00389	8.6E-4	38	100	IPR001356	Homeobox domain
CDD	cd00086	2.97E-6	40	92	No hit	No description
Pfam	PF00046	7.5E-8	40	91	IPR001356	Homeobox domain
SMART	SM00340	2.9E-4	89	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDQGREKDQC LWRSSLSTAS EDEDEDIVNA EPSEAGGENK KKLRLTREHS AMLERVFRTQ 60 STITNTMKRE LADRLNLHPR QIEVWNKLKR MEVNYELMKK CFERLSCENQ QLKEELKKMR 120 SMITSSVCPS CQRLREELHR MDECSLSTDI HVDNT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081077.1	2e-23	homeobox-leucine zipper protein HAT14-like
Refseq	XP_020099545.1	3e-23	homeobox-leucine zipper protein HAT14-like
Swissprot	A2Z1U1	5e-21	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
Swissprot	Q67UE2	1e-20	HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
STRING	Gorai.007G057100.1	4e-22	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-22	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Spipo5G0004100