PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0004700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 229aa    MW: 24506.2 Da    PI: 8.3551
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0004700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.64.4e-1526554877
                    SEEETTT--SS--S-STTTT-------S-- CS
             SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77
                    rfh lsefDe+krsCr+rLa+hn+rrrk+q
  Spipo5G0004700 26 RFHLLSEFDEAKRSCRKRLAEHNRRRRKSQ 55
                    9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.588154IPR004333Transcription factor, SBP-box
PfamPF031109.7E-82653IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.08E-122658IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.1E-52641IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MASQESQTLV RSPEKHLTVI SVWFLRFHLL SEFDEAKRSC RKRLAEHNRR RRKSQFSPTM  60
STAGSDRSNP TNGSISSTDK NRLPSSNPTR NDAAAAKYLI PPPATSGCTI SGISQNNASL  120
DDHKTAAHLW NGPSLSLGGG GAAAASEKGP CFDFLPHYPP QMPSWVFVSE DNNNTSGSQR  180
SSSSSSSLFL HSPALFCNTP AEASQSASTV AEANLLQLGQ GLLEVDFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4174633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.12e-11squamosa promoter binding protein-like 14