PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0012800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 226aa    MW: 24030.7 Da    PI: 9.1242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0012800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1885133355
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +grW AeIrd       r r +lg+f++aeeAa+a++aa++ l+g
  Spipo5G0012800  85 YRGVRKRP-WGRWSAEIRDrI----GRCRRWLGTFDSAEEAARAYDAAARTLRG 133
                     9*******.**********22....24888**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1384133IPR001471AP2/ERF domain
PROSITE profilePS5103222.36684141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2884141IPR001471AP2/ERF domain
SMARTSM003803.6E-3384147IPR001471AP2/ERF domain
CDDcd000183.13E-1685141No hitNo description
PRINTSPR003672.7E-108596IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2185141IPR016177DNA-binding domain
PRINTSPR003672.7E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEAATLSFFT VGQGLEEAAT GGAPPVLEGI AAVVGYYVLF GDMKKGDLSP SAQSEEKKRK  60
FETDTAGSGD EASTAAAAAD DGRSYRGVRK RPWGRWSAEI RDRIGRCRRW LGTFDSAEEA  120
ARAYDAAART LRGSKARTNF ALPSSSRIPR PTSSPSPPSS SSSSGNTSSM DIGKKRMRHA  180
EAEEKKMCRV VSSVAHLFGS SSREGSPPGM RENLFDLDPD LDSGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16851401571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609636.13e-46PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLA0A1Q3BSP51e-46A0A1Q3BSP5_CEPFO; AP2 domain-containing protein
STRINGGorai.006G107500.14e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2502245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-21ERF family protein