PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0016800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 173aa MW: 18924 Da PI: 5.1781

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0016800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	153	169	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp Cgk+F+r n++ Spipo5G0016800 153 YSCPVCGKTFNRYNNMQ 169 99*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.0E-5	153	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MTDPYTNLFQ GYFSRYPSPL QPFQHVRINR NQTSITTFAV QPPPPPSPPL REALPLLNLN 60 EGDSPCTSFE ETQGDGRRKE PDGDEDSLAV NLHIGLPSPT PADVIPRVSS SSSTADDERE 120 APTGNPNAAI GRVNRGQYWI PTPTQILIGP TQYSCPVCGK TFNRYNNMQV RG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008780469.1	6e-47	zinc finger protein WIP2-like
Refseq	XP_009391887.1	2e-45	PREDICTED: zinc finger protein WIP2-like
TrEMBL	A0A1D1ZJL0	6e-44	A0A1D1ZJL0_9ARAE; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2H3X9K0	1e-45	A0A2H3X9K0_PHODC; zinc finger protein WIP2-like
STRING	XP_008780469.1	2e-46	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	6e-23	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0016800