PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0019200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 109aa MW: 12219.1 Da PI: 10.1514

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0019200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.4	1.9e-34	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPkti+++m+vkgLtl h+kSHLQkYRl Spipo5G0019200 43 KPRLRWTADLHERFVDAVAQLGGPEKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.961	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-32	40	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-17	42	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-25	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-9	45	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
FSGGRLPFSP QEEMFPGLIQ HQEAPIPQEE IRSPSLVLTA DPKPRLRWTA DLHERFVDAV 60 AQLGGPEKAT PKTIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEMGEQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583325.1	9e-58	protein PHR1-LIKE 2-like isoform X2
Swissprot	Q94A57	6e-40	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2I0WUB8	1e-56	A0A2I0WUB8_9ASPA; Myb family transcription factor APL
STRING	GSMUA_Achr1P19430_001	4e-53	(Musa acuminata)
STRING	GSMUA_Achr3P11980_001	6e-53	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-42	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0019200

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]