PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0019500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YC
Protein Properties Length: 174aa    MW: 19761.3 Da    PI: 5.9256
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0019500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1741.5e-54461491101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+fil+lt rsw haeenkrrtl+k+diaaa+trtd+fdfl
  Spipo5G0019500  46 QLQMFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILDLTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFL 140
                     89*****99999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++ 
  Spipo5G0019500 141 VDIVPREDS 149
                     ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3332140IPR009072Histone-fold
PfamPF008082.5E-2168131IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.4E-3769146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEQKDHAGHP AIGVAATMPY GAPAGGPYSA YQHIYQQQQQ QQQQQQLQMF WADQYREIEQ  60
TTDFKNHSLP LARIKKIMKA DEDVRMIAAE APVVFARACE MFILDLTHRS WAHAEENKRR  120
TLQKNDIAAA ITRTDVFDFL VDIVPREDSR DDVIPRALGA PAGDPLSYYY VQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5854146395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913291.11e-87nuclear transcription factor Y subunit C-6
SwissprotQ9XE336e-66NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A1D1YX502e-94A0A1D1YX50_9ARAE; Nuclear transcription factor Y subunit C-9
STRINGXP_008802191.13e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-66nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]