PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0021700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 267aa MW: 28324.2 Da PI: 7.238

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0021700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.3	9.9e-17	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f++L++l+P++ ++K +Ka+ L +++eY++ Lq Spipo5G0021700 51 RSKHSATEQRRRTKINDRFQTLKDLVPPN----DQKRDKASLLLEVIEYVQLLQ 100 899***********************9....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-21	46	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-18	47	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.863	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.83E-16	51	104	No hit	No description
Pfam	PF00010	2.2E-14	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-13	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVTAARSNGG FADGEDDIFV KEEFSHKEST VNVDVGNTSD NNNDQKPSTP RSKHSATEQR 60 RRTKINDRFQ TLKDLVPPND QKRDKASLLL EVIEYVQLLQ DKVQKYESSS SSCPGRTQDG 120 AKLTPWRARQ DSAAGAADHS QSHHHPPPAA PVLPLGGAGA GAADPESGGV ASQQQPLRWS 180 PSGGNDEHAP PADEGLSNLS TMYSQGLLAR LTRAMEGSGV DLTRASLAVR VNLGRRATTL 240 PVGPTAEGPT EPPSARPGKR LKPEAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788923.1	3e-55	transcription factor BIM2 isoform X6
TrEMBL	A0A1D1YYA2	7e-55	A0A1D1YYA2_9ARAE; Transcription factor BIM2 (Fragment)
TrEMBL	A0A2H3XUW6	7e-54	A0A2H3XUW6_PHODC; transcription factor BIM2 isoform X6
STRING	XP_008788920.1	3e-51	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-32	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Spipo5G0021700