PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0026400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family E2F/DP
Protein Properties Length: 392aa    MW: 44295.3 Da    PI: 7.4967
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0026400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.79.7e-241277171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll+++f++l+ +s  + v+l+++a++L    v  +rRRiYDi+NVLe+++++++k kn+++w+g
  Spipo5G0026400 12 RKDKSLGLLCTNFMNLYGRSGVDLVCLDDAADRL---GV--ERRRIYDIVNVLESVGVLARKGKNQYSWIG 77
                    79********************************...**..****************************98 PP
2E2F_TDP65.76.3e-21163245171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL+l+tq+f+kl+  +++ +++l+e+a+ L+ +       +   k+RR+YD++NVL++l liek     ++k+++rw g
  Spipo5G0026400 163 RREKSLGLFTQNFVKLFLITDAVVISLDEAANLLLGDgyssqtrNCAAKVRRLYDVANVLSSLSLIEKthdseSRKPAFRWLG 245
                     689**************************************9998888********************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-26878IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.5E-291277IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.42E-161276IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-201377IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-21161247IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-24163245IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.0E-17165245IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.13E-11165246IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELESRANKY CRKDKSLGLL CTNFMNLYGR SGVDLVCLDD AADRLGVERR RIYDIVNVLE  60
SVGVLARKGK NQYSWIGLCG IPQALKNLKE EAMKEIKGNL SPKPAPLVED PFLSVWFEKY  120
PDDEAEDDLS HQIVGHGEDR TRHNSSIAHG NVYSKWGSGM ENRREKSLGL FTQNFVKLFL  180
ITDAVVISLD EAANLLLGDG YSSQTRNCAA KVRRLYDVAN VLSSLSLIEK THDSESRKPA  240
FRWLGFNRKL QSAVTDAPGQ ASRQWSGRTF GLDITNLDFK KSKIPTALQS KSNVIKECSL  300
AVQRQLQNSP GYVFGPFCPV RVDKKDMDPE AILERRACDW ETLTASFHPR YHNQALSDLF  360
AHYMEAWESW YIEVAREVGD VPSFKEVMHY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-31122374228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913426.11e-128E2F transcription factor-like E2FE isoform X3
TrEMBLA0A2H3YFG21e-126A0A2H3YFG2_PHODC; E2F transcription factor-like E2FE
STRINGXP_008798029.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-95DP-E2F-like 1