PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0028100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 188aa    MW: 19729.1 Da    PI: 8.29
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0028100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20856355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr+++ +gr++AeIrd ++    ++r++lg+f+++e Aa+a++aa+++l+g
  Spipo5G0028100  8 FRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDSPEAAARAYDAAALALRG 56
                    79******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.749764IPR001471AP2/ERF domain
SMARTSM003803.6E-34770IPR001471AP2/ERF domain
CDDcd000189.94E-19866No hitNo description
SuperFamilySSF541711.77E-22865IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-31865IPR001471AP2/ERF domain
PRINTSPR003671.0E-9819IPR001471AP2/ERF domain
PfamPF008478.1E-14856IPR001471AP2/ERF domain
PRINTSPR003671.0E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
GSVKEMAFRG VRRRPWGRFA AEIRDPWKKT RVWLGTFDSP EAAARAYDAA ALALRGPKAK  60
TNFPSSGAAA TAAPPLPIHR PPPQKLRPTT SGYSSTVDSF SGLRRSCSTS QLRPSISRPP  120
FVVDGDGGGD GDCHSDCGSS SSVVDDGDIA ASSSFRHQPQ APPPAFDLNL LPLGGDDDCC  180
QCTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-198661574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296401e-41KP229640.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF17) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020694474.12e-51ethylene-responsive transcription factor 3
SwissprotQ9SXS85e-32ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1D1YKK74e-52A0A1D1YKK7_9ARAE; Ethylene-responsive transcription factor 3 (Fragment)
STRINGXP_008801873.12e-42(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-25ethylene responsive element binding factor 3