PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0031100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 113aa    MW: 13354.5 Da    PI: 8.5167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0031100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.4e-1425104188
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     ffkvl     +++ rl++p+kf+    g    + ++     s  +W++kl  +k++++++l++GW+eF++a+ L++ Df+vF+++g+ +
  Spipo5G0031100  25 FFKVL--LGDFSR-RLSVPRKFMVLLRGR--LPEMVE--LDSEGRWRIKL--KKTDCTTFLEEGWEEFARAQFLEVVDFLVFRVVGSlE 104
                     66666..555555.6********777655..443444..445789*****..*******************************988633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-1519104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1619102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.20722112IPR003340B3 DNA binding domain
CDDcd100173.62E-122398No hitNo description
SMARTSM010199.5E-425112IPR003340B3 DNA binding domain
PfamPF023621.6E-1125105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MQETGRGSPE VPYSNWRMRT QKPHFFKVLL GDFSRRLSVP RKFMVLLRGR LPEMVELDSE  60
GRWRIKLKKT DCTTFLEEGW EEFARAQFLE VVDFLVFRVV GSLEDPLFLD FH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.13e-09B3 family protein