PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0043600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YB

Protein Properties

Length: 214aa MW: 23094.8 Da PI: 4.5298

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0043600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	163.4	3.2e-51	42	136	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPianv+rim++vlPa+aki++daket+qec se+isfvtsea+++c++e+rk i+++dllwa+++lGf+dy++pl++yl++yr++eg Spipo5G0043600 42 VREQDRFLPIANVIRIMRRVLPAHAKIADDAKETIQECLSEYISFVTSEANERCKQEQRKIITAEDLLWAMSQLGFDDYLQPLTLYLQRYRDVEG 136 69*******************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-46	40	137	IPR009072	Histone-fold
SuperFamily	SSF47113	4.02E-35	45	138	IPR009072	Histone-fold
Pfam	PF00808	1.6E-25	48	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.7E-16	76	94	No hit	No description
PRINTS	PR00615	4.7E-16	95	113	No hit	No description
PRINTS	PR00615	4.7E-16	114	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAGGAAASDK KDADQSASNN TTLTEVALAG MEAADGGEGP AVREQDRFLP IANVIRIMRR 60 VLPAHAKIAD DAKETIQECL SEYISFVTSE ANERCKQEQR KIITAEDLLW AMSQLGFDDY 120 LQPLTLYLQR YRDVEGGSIH RDALLTPLKR AASDAGLGPT GSAATPGEVE IIPERSEGAE 180 SSQARACQGT PKDGFQRYAP YNMDRVKNMA SDE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-56	37	133	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021766652.1	2e-58	nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A0K9PD88	5e-57	A0A0K9PD88_ZOSMR; Uncharacterized protein
STRING	XP_010686691.1	1e-56	(Beta vulgaris)
STRING	A0A087GNA2	1e-56	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-59	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Spipo5G0043600