PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0045600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 203aa MW: 22667.7 Da PI: 7.591

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0045600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.7	2.6e-13	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ eE+ l++ + ++G+g+Wk+I++++ + Rt+ q+ s+ qk+ Spipo5G0045600 112 AWSDEEHRLFLLGMDLHGKGDWKSISQYFVLSRTPSQIASHAQKF 156 7******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.634	105	161	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-16	107	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-14	109	159	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-9	109	159	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	112	155	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-10	112	155	IPR001005	SANT/Myb domain
CDD	cd00167	6.82E-9	112	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MAANNFPDTN AVCANVLRML ERELLVDLDE PSLYQKLAAA NPGANPEQLQ AQFYAVLEDY 60 NAVMAGVRPV PNYDSYLIQT LPSPAATAES ISALIESLKQ TLPNRRTTKN VAWSDEEHRL 120 FLLGMDLHGK GDWKSISQYF VLSRTPSQIA SHAQKFFKRL KKRQQNVQDI TTSNNFSQQP 180 GYILKNVPVN YSAQLPMPVD NI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-26	MYB family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0045600