PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0046200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YC
Protein Properties Length: 192aa    MW: 21821.9 Da    PI: 6.9581
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0046200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC96.91.6e-3088184396
           NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                       fw+++   +++++ + +h lP++ri+ i+k + dvkmis+ +P ++skace+fi+e+t+r+wlha+   r++l+ +di ++++  d + flvd
  Spipo5G0046200  88 LLFWQYRlleLNDTSVVYRHLLPFSRIRSIMKRNADVKMISTVTPRIFSKACEFFIMEITVRAWLHAQAWGRESLQMTDIVSTLAPGDGYGFLVD 182
                     5799998544555566779**************************************************************************** PP

           NF-YC  95 iv 96 
                     + 
  Spipo5G0046200 183 ML 184
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.72E-17103177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-19105168IPR009072Histone-fold
PfamPF008087.6E-10109169IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDPIRSSLST SVPPDGLQQR DGDNYLPPAE PLEPSSSNRL LEAIQPSYDH WLSPQVPLLE  60
TNQANAATDM NTSHFNMQLL NITRNRLLLF WQYRLLELND TSVVYRHLLP FSRIRSIMKR  120
NADVKMISTV TPRIFSKACE FFIMEITVRA WLHAQAWGRE SLQMTDIVST LAPGDGYGFL  180
VDMLRSSRPN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-23731845117HapE
4g92_C3e-23731845117HapE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-27nuclear factor Y, subunit C2