PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0046300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YC
Protein Properties Length: 205aa    MW: 23128.1 Da    PI: 4.3926
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0046300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC99.13.3e-31100197296
           NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                     l+ fw+++   +++++ + +h lP++ri++i+k +e+v+mis+ +  ++skace+fi+e+t+r+wlha+   r++l+ +di +a++  d + flv
  Spipo5G0046300 100 LQLFWQYRlleLNDSSVVYQHLLPFSRIRNIMKRNEEVQMISTVTSRIFSKACEFFIMEITVRAWLHAQAWGRESLQMTDIVSALSPGDEYGFLV 194
                     899***9954445555577**************************************************************************** PP

           NF-YC  94 div 96 
                     d+ 
  Spipo5G0046300 195 DML 197
                     *86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-17113197IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-19118183IPR009072Histone-fold
PfamPF008082.0E-10122184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDPIRSSLST SVPADGLQQP DGYNYLPPAE PLEPSSSDRL LELPGVPPAS QDDFGTIQLS  60
YDNWLSPQVP LLETNQANAA TDMNASDFNT QLLNITRNRL QLFWQYRLLE LNDSSVVYQH  120
LLPFSRIRNI MKRNEEVQMI STVTSRIFSK ACEFFIMEIT VRAWLHAQAW GRESLQMTDI  180
VSALSPGDEY GFLVDMLRSS RPNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-23861975117HapE
4g92_C4e-23861975117HapE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-27nuclear factor Y, subunit C2