PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0048300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 330aa    MW: 35965.7 Da    PI: 8.9424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0048300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1394138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   Spipo5G0048300  94 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 138
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1688144IPR009057Homeodomain-like
PROSITE profilePS5129415.40889143IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-692144IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1892141IPR006447Myb domain, plants
SMARTSM007175.3E-1193141IPR001005SANT/Myb domain
PfamPF002492.7E-1194138IPR001005SANT/Myb domain
CDDcd001672.02E-896139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
WSKLCCGFSW ISLLRMTVEG GGPVGGYLVE QPQQQQQQQQ RQAQPPPPPP PSPPGMALLG  60
YGSLTPSAAA VNANSSTEDP SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE  120
AFVGSKTVIQ IRSHAQKYFL KVQKNGTSEH VPPPRPKRKA AHPYPQKASK NAPLLSQGGR  180
PFQASCLLEP NSAIRMDSPS VLRSSGTGTT VASWSHSTSV PPLGASNLTK DDARLGGSAV  240
VNNCCSSSTE SPSGTWPISD TTVQQNHMAS LRVMPDFVQV YSFIGSVFDP NTSGHLQKLK  300
EMDPIDVETV MLLMKNLSVN LTSPDFEDH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794786.11e-134protein REVEILLE 5-like isoform X6
SwissprotQ8H0W32e-96RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1D1Z8361e-156A0A1D1Z836_9ARAE; Transcription factor ASG4 (Fragment)
STRINGXP_008794784.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]