PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0058700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 522aa    MW: 56969.3 Da    PI: 6.2755
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0058700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.3e-28292344255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +++Wtp+LH+rFv+aveqL G+++A+P++ilelm v+gLt+++v+SHLQkYR+
  Spipo5G0058700 292 MKVDWTPDLHRRFVQAVEQL-GIDQAIPSKILELMRVEGLTRHNVASHLQKYRM 344
                     5799****************.********************************7 PP
2Response_reg28.29.5e-114714014109
                     HHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
    Response_reg  14 lrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                     +++ le+ +y +v  + d +eale +  k + +++ ++ +   ++dG   ++ ++++   lp i+++  +  e++ +++ +Ga +fl Kp+++e+
  Spipo5G0058700  47 IKSKLERMEY-SVSLFGDEREALEAVacKSESFHVAIVEVTAANSDGC--FRFLETA-RGLPTIMISEAECIETMMRCIALGAAEFLQKPVSEEK 137
                     567789999*.**************9766666**************94..4455444.48**********************************9 PP

                     HHH CS
    Response_reg 107 lvk 109
                     l +
  Spipo5G0058700 138 LKN 140
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.05233146IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.34E-947145No hitNo description
SuperFamilySSF521721.57E-1147148IPR011006CheY-like superfamily
PfamPF000723.9E-747140IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-1347166No hitNo description
PROSITE profilePS5129415.064288347IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-27289346IPR009057Homeodomain-like
SuperFamilySSF466894.21E-18290347IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-25293346IPR006447Myb domain, plants
PfamPF002492.1E-7294343IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MCETPAVNEE QRRDERPPAM DDLVGWRDFP KGLRVLLHEG GASSSDIKSK LERMEYSVSL  60
FGDEREALEA VACKSESFHV AIVEVTAANS DGCFRFLETA RGLPTIMISE AECIETMMRC  120
IALGAAEFLQ KPVSEEKLKN IWQHVVHKAF NAGGAAISKS LKPIKETVSS MLQLPPGEGS  180
AEPPPAAAAA AAAEEEDEEP SPASDRFPAP TTPQLEQFSR SAPSDLSKTC NKSVDETCNN  240
STGEEDDGEK EISAPPSCPS DEGDMEDPTK SATAALRRSP PPAGSRASKK RMKVDWTPDL  300
HRRFVQAVEQ LGIDQAIPSK ILELMRVEGL TRHNVASHLQ KYRMRKRHAL PKDDGRGWQR  360
PANPPPPARA CQYRPLVAFP APGGYAGCSH MYPVWGHPHA AAAAAAAGFP PWQPPADHWP  420
WKTFPRMHAD AWGCPVVHQS PYAAAAAISP QYAAPPPSRR PGAAEHQKRD DVGLAEEVID  480
EVVREALREP WRPLPLGLKP PSTESVLEEL HRQGIHRVPP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-17291344154Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279150.11e-155PREDICTED: two-component response regulator-like APRR2 isoform X1
TrEMBLA0A1D1ZG390.0A0A1D1ZG39_9ARAE; Two-component response regulator-like APRR2
STRINGVIT_02s0012g00570.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-101ARR-B family protein