PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0059900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 743aa    MW: 82568.4 Da    PI: 7.0307
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0059900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.44.9e-2381170190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++Yn+YA++vGFsvr + ++ s+++g ++ r fvCsk+g+r + k ++  ++ +r+ tr+gC a +k+k+  d++++++++++ HnHela
  Spipo5G0059900  81 EYYNQYARKVGFSVRWDCKTVSRKTGLTIARLFVCSKQGYRGDGKIRDLFAKYHREDTRCGCPAFMKIKLAADDRFHISDCNTAHNHELA 170
                     69******************************************999899999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2081170IPR004330FAR1 DNA binding domain
PfamPF105516.5E-29316409IPR018289MULE transposase domain
PROSITE profilePS5096610.064601637IPR007527Zinc finger, SWIM-type
PfamPF044340.0024614631IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MEGAEQLHEV SHLGSGVDHR ADFAKEAAID GSMAGYGTLL DRGSANGSLS QTDASDRGSL  60
SHAVPDPAVG MAFDSERAAF EYYNQYARKV GFSVRWDCKT VSRKTGLTIA RLFVCSKQGY  120
RGDGKIRDLF AKYHREDTRC GCPAFMKIKL AADDRFHISD CNTAHNHELA TPHYVHMLRS  180
QRPRSGGGSA QASASGKRKR KKKDPAAGVA DDSGGGSEGL GMEVAAVSQS MGQQAVDGID  240
DGMMQLQVDC RNYLPTRRTT GLPKFDGHGL LEYFRNKQAQ DPSLFYSFQF DVEEQIANIF  300
WADGRMRVDF SHFGDVICFD TTYKMNDYGR PLALFLGVNH HKQLTVFGVA LLYDETVDSF  360
RWVFRTLLEA MGGSMPVTLL TDEGEAIAAA VAAELPYAAH RLCVWHLYQR ALKNLAHIFS  420
GAKSFDDDLG KCLFDCELEA DLFEAWNAML VKYGLFENTW LQHKFDERER WAAAYGRSTF  480
CADIRSSQRA ESLTRELRGC LQLPGGGGGG DGGVLRFFAR FERFLEGKRR QELEANFRMT  540
QSQPYVPPVS IIKHAARVYT SSVFYMFMAE YVVGLECLIK NEEVNGQVRV LTVEDGRRHE  600
YLVRVDMEEQ VFGCTCQRFE FAGVLCGHIL ACITDDLRAI PDRYVLKRWT RAAGEPPSGE  660
AAPPPPHLHS RRYDLLVRGF VPALLKAAGD EDLYNCAVRC KTCGGSGLGY CSRCLGTGEY  720
RDIMGFHFMK APSNGSSAQH NF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202KRKRKKK
2197201RKRKK
3197203RKRKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Z2I60.0A0A1D1Z2I6_9ARAE; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-94FAR1-related sequence 5