PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0066000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 407aa    MW: 43807.3 Da    PI: 4.7708
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0066000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36231152103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i++d++++ +isws+++n+f+v+++ ef+k++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++
  Spipo5G0066000  23 FLSKTYDIVDDPATDGIISWSSTNNTFIVWNPPEFSKTLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKHLLRN 108
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  Spipo5G0066000 109 ISRRKAS 115
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.0E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-3520112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3820112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDAGGGGDVA GRASTGAGLP PPFLSKTYDI VDDPATDGII SWSSTNNTFI VWNPPEFSKT  60
LLPKFFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GKKHLLRNIS RRKASHSQSQ  120
PPPQAPSAGP FIEVGKFGVE EEIERLKRDK NVLVQELIKL RQQQQATDHQ LRTLGQRLQG  180
MEQRQQQMMS FLAKAMQSPS FLAQFVHHND AAGRRIAGGG AKKRRLPTGG EELFPDGQII  240
KYQPPASEAA QAMMTQIVQI GGFPSLEEPA IIGVPPPEIQ PSPPRITEMV ADAGDFPAAA  300
EEGLEIPTGI EDLVGPIGIG MDDVASEIGV GIGIPLEDGS DLPGINDSFW EQFLAGSPLP  360
VGGGEEAPPA DGGGSTGVDD GGDCHAARRL DRLTEQMGLL SSELRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26511210129Heat shock factor protein 1
5d5v_B3e-26511210129Heat shock factor protein 1
5d5v_D3e-26511210129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245198.11e-136PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-114HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A1U7ZBI81e-135A0A1U7ZBI8_NELNU; heat stress transcription factor A-1
TrEMBLA0A2I0BEK61e-135A0A2I0BEK6_9ASPA; Heat stress transcription factor A-1
STRINGXP_010245198.11e-135(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-92heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]