PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0066100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 127aa    MW: 13825.9 Da    PI: 7.0827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0066100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.2e-1615104599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     l +++v  + +lv+pk+f +e        +  ++ +  ++sW v +   +  ++  + + W++F+ +n+Lk+gD ++F+l+++ ++ +++v++++
  Spipo5G0066100  15 LARANVDCQFQLVIPKSFYAELPAA----TLPVVLSCGNKSWAVSY--LGDCKQRRFDSRWRNFAVDNHLKVGDACIFELMDSgKSLKFKVQILD 103
                     5667888999*********988533....2347778899*******..66666666999*********************988899999999987 PP

                     S CS
              B3  99 k 99 
                      
  Spipo5G0066100 104 G 104
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-177103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-177103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-179103No hitNo description
SMARTSM010199.4E-510105IPR003340B3 DNA binding domain
PROSITE profilePS5086311.26511105IPR003340B3 DNA binding domain
PfamPF023621.1E-1316103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MTEPLSGKPF FSCILARANV DCQFQLVIPK SFYAELPAAT LPVVLSCGNK SWAVSYLGDC  60
KQRRFDSRWR NFAVDNHLKV GDACIFELMD SGKSLKFKVQ ILDGSIPSFV AALDDGSSSN  120
SPITID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802551.11e-40B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1D1Z2E35e-49A0A1D1Z2E3_9ARAE; B3 domain-containing protein Os04g0386900
STRINGXP_008802551.14e-40(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.13e-08B3 family protein