PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0074900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRF
Protein Properties Length: 380aa    MW: 39570.7 Da    PI: 8.3689
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0074900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28.2e-2585129145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Spipo5G0074900  85 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVET 129
                     79****************************************996 PP
2QLQ64.52.7e-222459237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FTa+Q+q+L++Q+l++KyL+a+ PvPp+Ll++i++
  Spipo5G0074900 24 PFTASQWQELEHQALIFKYLMAGIPVPPDLLLPIRR 59
                    9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-132359IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.4032459IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-172458IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.51785129IPR014977WRC domain
PfamPF088797.2E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNSTAAAAAA AAAAAAAAAG CRPPFTASQW QELEHQALIF KYLMAGIPVP PDLLLPIRRS  60
LESMAARFYH HPAMGYCSFY GKKLDPEPGR CRRTDGKKWR CSKDAHPDSK YCERHMHRGR  120
NRSRKPVETP NLSQPQPSSS SPSSTVTSLA PSGSGVSGGG GGGGGGSFPS GILLQSLGGG  180
GGGGGGTSAA QVSLTGTSLS PLQMDPSSYG MGSKDFGYLR GVKAEVDGHS FFSEASGSAR  240
GLGMDFSLDS AWRQIPSQAP YSLPRAGGGG GGGATLLQGG GGGGYPQLHP SQDFGQVTLS  300
SLSKQQQQQH CFFGSDFGGG EAAKHESQPL RPFFDEWPKA RDSWSELEDE RSNRTQLSIS  360
IPMASSDFST TSSRSPNDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156166SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255823.11e-152PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY64e-97GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A1D1YZJ30.0A0A1D1YZJ3_9ARAE; Uncharacterized protein (Fragment)
STRINGXP_010255823.11e-152(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-47growth-regulating factor 5