PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo6G0015400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

GeBP

Protein Properties

Length: 383aa MW: 40156.4 Da PI: 4.9982

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo6G0015400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	114.7	5.6e-36	137	236	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 lfqrlw+++Dei++LqG++ f++++ + + ++d+ afy++++ +i+++++k+qlveK+rrLKkK+++ ++++sgk+ +f+++hdq +f+ls Spipo6G0015400 137 LFQRLWTDDDEIAILQGFLAFTSQRSSslhHNHQDTGAFYDQIRARIQLDFNKNQLVEKLRRLKKKYRNITNRIRSGKDYAFKSPHDQAAFDLSD 231 79********************9996667788********************************************************* PP DUF573 94 kiWgs 98 kiWgs Spipo6G0015400 232 KIWGS 236 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-34	138	235	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MPSPAAAAAA AAAGGEGPAG SFLEGLEDLE NEDQTAAAGE EPAAGLDDEE VSSPSTSSAE 60 IAAAAAAVAA AENHSSNGGH RLSAASDPVP SSADKPAAAE EDGSAAPDGK RRRTEGGSEP 120 GKGPPAAAAA AEDSRRLFQR LWTDDDEIAI LQGFLAFTSQ RSSSLHHNHQ DTGAFYDQIR 180 ARIQLDFNKN QLVEKLRRLK KKYRNITNRI RSGKDYAFKS PHDQAAFDLS DKIWGSATAA 240 AAPDDDDDDD DDGGDRWKRH RKRPATAAAT AAAPAEVKAT GGPMPVPNVI EETMRSCLSP 300 MFKELLHCAT PPAAVAGGWG GLGLSPLPFG LGGPAANAKA PTAVVDAKWR KQQILELEVF 360 SRRIDLMQEQ IKLVLAELRS AR*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MPSPAAAAAA AAAGGEGPAG SFLEGLEDLE NEDQTAAAGE EPAAGLDDEE VSSPSTSSAE  60
IAAAAAAVAA AENHSSNGGH RLSAASDPVP SSADKPAAAE EDGSAAPDGK RRRTEGGSEP  120
GKGPPAAAAA AEDSRRLFQR LWTDDDEIAI LQGFLAFTSQ RSSSLHHNHQ DTGAFYDQIR  180
ARIQLDFNKN QLVEKLRRLK KKYRNITNRI RSGKDYAFKS PHDQAAFDLS DKIWGSATAA  240
AAPDDDDDDD DDGGDRWKRH RKRPATAAAT AAAPAEVKAT GGPMPVPNVI EETMRSCLSP  300
MFKELLHCAT PPAAVAGGWG GLGLSPLPFG LGGPAANAKA PTAVVDAKWR KQQILELEVF  360
SRRIDLMQEQ IKLVLAELRS AR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241430.1	3e-85	PREDICTED: probable transcription factor At3g04930
Swissprot	F4K5T4	2e-59	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A1U7YNC5	6e-84	A0A1U7YNC5_NELNU; probable transcription factor At3g04930
TrEMBL	A0A200R1M1	1e-85	A0A200R1M1_9MAGN; Uncharacterized protein
STRING	XP_010241430.1	1e-84	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-40	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Spipo6G0015400

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]