PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0020000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 344aa    MW: 37296.6 Da    PI: 7.1544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0020000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-13158201654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     n  E++RR ++ ++f+ Lr+l+P++     +K + a+i+ +A+eYIk+L
  Spipo6G0020000 158 NTTEKQRRGKMSEKFSLLRSLIPHP-----RKHDRASIVAEATEYIKEL 201
                     889*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.17152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13157221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-11157206No hitNo description
SuperFamilySSF474591.83E-14158225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10158201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNVGIYGEPG YLSLHARLHS LLGEVAVGGG DNATAEAGGD VTAREDNLQG KRDLSGFFSP  60
CLQIIHGEAA PDAGVYCNGL PLFLATNCQE RQAASAFDLP PMQVDLGNQQ EYGLFPCSAA  120
ALGGGHHGCS SSPLLGFWPE MEMEMAIDKR RGDTKGSNTT EKQRRGKMSE KFSLLRSLIP  180
HPRKHDRASI VAEATEYIKE LLRTVEELQA LLAARRRRVE EWKNPMAVHG GGHPPPRCSW  240
VQRRLRGISV DVRIVEDEVV VRLLRRGGTH CLLHLSRALL DLQLDLLHLA AGNIGDSHVI  300
VINCKIEESS SVYGSAIAKK LVEALEGTVP VAPLKNGRES LNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Y3U55e-68A0A1D1Y3U5_9ARAE; Transcription factor bHLH89
STRINGXP_008793418.11e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-17bHLH family protein