PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0025700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 796aa    MW: 85536 Da    PI: 4.4175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0025700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15649694555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+ l+P++      K++Ka++L +++eY+ksLq
  Spipo6G0025700 649 HNLSERRRRDRINEKMRALQALVPSC-----NKVDKASMLDEVIEYLKSLQ 694
                     9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.714644693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-20647720IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-20648702IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12649694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-15649698No hitNo description
SMARTSM003531.1E-16650699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
GVGCPLSMAT ESPLGKGASR EIEEKRVTGD AEPVEEDEAS RAKEAAGSET PAADHKVKEE  60
NSNVDFSAVT EKAEGQVSKG PQPEALGQKK DDEGSATEEA ERGEEDGASA GKPAEESTMA  120
GESLAGAVGK PLLDSGPASA EEPEPEISIN PREQSADHSV TDHDVMEEPE GRNEAPKVNE  180
AVEAPTDESF CTVVVKGSEL EETGDSESQA PGRQKEEEAV DREPEEVGRD IRAPDPGPEI  240
EKYPAEAVEG AVIKSVERGE DRTIEEPEER NETPKVSNDG SSTTVEVKEP ELGKKDSETQ  300
APEEDPASAT KSTESSEEEE KEKEKEEGSE TTGVGELSKE TKIEEAEKYE RTTEERDEGA  360
VKKDEKTRNL AELFKQEGGP EVQQEEAPTR PSRSLMAKVK HSIGKMKKAI VGKSPPSGTI  420
PGDGREGESL RCLILIFLGR QDSLLPKIAS CSPASSPLMT DRELVKLLWE SGGRPRKGGA  480
FSGSLPFFSG RDPEREDDEL VAWLSCPIDD YCSDLLCDLS GADVVSSAAA AAAPAASSRA  540
PAGPVEASRV SSVKELANKD AAAPKAVLNF SIFSRPLMES SSLIKPAAPT AAAMKPVSEN  600
GARRRRRVED EEIEDQTDEQ GEDESTDRRR PADKGQAVNT KRSRSAEIHN LSERRRRDRI  660
NEKMRALQAL VPSCNKVDKA SMLDEVIEYL KSLQMQVQAM SMGRGLFMRP MMLPSGMGMN  720
MSMGMMGMAM VDMPGFPMMP FPPLHGHPHG STGIHMAMPG ANGPHMVGIM PGQVVPMSMI  780
HTPHFIPFGF GESEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1652657ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-31phytochrome interacting factor 3