PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0032300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 215aa    MW: 22531.3 Da    PI: 7.505
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0032300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.1e-0962116357
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     + k  r++  NReA r++R++Kka+++ Lee++ +L   Nk+L  +l++l+++ a
  Spipo6G0032300  62 KPKQPRKLLGNREAVRKYREKKKARTAFLEEEALKLRLLNKQLSAKLQSLEDLEA 116
                     568889********************************************99755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-860127IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1261126No hitNo description
PROSITE profilePS502178.93362128IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.65E-764114No hitNo description
PfamPF077169.4E-1067112IPR004827Basic-leucine zipper domain
CDDcd146863.89E-1167112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEGGDEGLHL EIADLLRSVR ACSHTHSCSP PGAAAAGHTH TCRHTHTQVV APAAGAAGGE  60
AKPKQPRKLL GNREAVRKYR EKKKARTAFL EEEALKLRLL NKQLSAKLQS LEDLEAEVAR  120
LRGLLLGLSG KIDTEMGGCP LQNPCEDPGF QCNPNASFTA RTVSTPGLEG YCRPAVGDFH  180
GDPDAQNVGQ NSGPGAVRSM DAAGSLFSSS SPAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788583.12e-57basic leucine zipper 23-like
RefseqXP_017698050.12e-57basic leucine zipper 23-like
TrEMBLA0A1D1ZHT02e-57A0A1D1ZHT0_9ARAE; Transcription factor TGA3
STRINGXP_008788583.19e-57(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.23e-34basic leucine zipper 24