PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0037800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SRS
Protein Properties Length: 335aa    MW: 36012.4 Da    PI: 7.6061
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0037800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702190.18.3e-591202874154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaes 96 
                      ++ C+dCGnqakkdC++ RCRtCCk+rgfdCathv+s Wvpaa+rrerq   aa  ++       a +k++r      ++++a+++t++s++++
  Spipo6G0037800 120 SSVPCEDCGNQAKKDCTYLRCRTCCKNRGFDCATHVRSSWVPAARRRERQISVAANPADGG-GDGGAGTKKPRLFpsDVQASNATAATHTSNSNT 213
                     5678*********************************************988888765554.456677777777633334444444444444443 PP

          DUF702  97 kkeletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      + ++ +s                 l  +++++avf+c+r++sv+dge+elaYq+ v igGhvfkG+LydqG+ee
  Spipo6G0037800 214 IT-IPPRSyntgschrdpdwrvrenLTGQLRAPAVFKCLRMTSVEDGEDELAYQAEVRIGGHVFKGLLYDQGVEE 287
                     32.222224667799*********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-55122286IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.2E-25124165IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-24239285IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGMIGLRDAS FPVMYDHPID TASLITGTSC FTDDSDAGVR RGRFSTGANI WHNQFIRQPL  60
PQVLENPHPL TAPFSCISRP TPISLFDSAI ADATAADFSE GSLSCSGGAG WFANAVAQSS  120
SVPCEDCGNQ AKKDCTYLRC RTCCKNRGFD CATHVRSSWV PAARRRERQI SVAANPADGG  180
GDGGAGTKKP RLFPSDVQAS NATAATHTSN SNTITIPPRS YNTGSCHRDP DWRVRENLTG  240
QLRAPAVFKC LRMTSVEDGE DELAYQAEVR IGGHVFKGLL YDQGVEEADA VRTSGHDASL  300
RAVRDAPRIR ILPLVTGANK WETKLSGVVC MYII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-51Lateral root primordium (LRP) protein-related