PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0045700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 171aa    MW: 18964.4 Da    PI: 8.3181
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0045700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.64.2e-133763127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    +++++C++++rtG C +Gd+C+F+H++
  Spipo6G0045700 37 PGEPECNYYMRTGRCDFGDKCRFNHPR 63
                    5899*********************96 PP
2zf-CCCH37.54.1e-1299123327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f++tG Ck+G++Ck++H++
  Spipo6G0045700  99 QPVCQYFLKTGSCKFGATCKYHHPR 123
                     689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-63663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7043664IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-103863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-74065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-64263IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-696123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61996124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-797125IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-1099123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6101125IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.46141160IPR000571Zinc finger, CCCH-type
SMARTSM0035660141162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEEGGSRPSA DTGLEESMWQ LSLGGGVSNQ PAYPERPGEP ECNYYMRTGR CDFGDKCRFN  60
HPRNRVVNVL PFTRPFHLFD NIAAASASPG VEYPERVGQP VCQYFLKTGS CKFGATCKYH  120
HPRREGAVSP VHLNIFGYPM RKGEKECSYY VKNGNCKFGA TFGKEPGLCH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417930.13e-57PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ2QT654e-50C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1D1Y1131e-62A0A1D1Y113_9ARAE; Zinc finger CCCH domain-containing protein 6
STRINGXP_004296815.12e-55(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]