PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0052700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 226aa    MW: 25207.7 Da    PI: 6.8792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0052700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-1385131354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h e+E+rRR+riNs +++Lr +l  +      K +Ka+ L kAv+++++L
  Spipo6G0052700  85 RNHREAEKRRRERINSHLDRLRAILACD-----SKIDKASLLAKAVQHVRDL 131
                     68************************98.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.88182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1385140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1085131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1286139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-988137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-495133No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-5165219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRGEELFPME QQILPGSLNM FRGLPESLQP ELGFFGSMEP LSYSSDHGVE AMAWGIPGLF  60
SPFHPPEMVG ATAEEPLNRA TAAARNHREA EKRRRERINS HLDRLRAILA CDSKIDKASL  120
LAKAVQHVRD LKQRASEIDN VEHFPSETDE ISVHPDGRRP TFTASLCCED RAGLLPELGE  180
AVKSLRLRIL RAEIATLGGR DALRALVDRP EAAECQKRRR VLENR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216220KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.12e-59PREDICTED: transcription factor bHLH106-like
SwissprotO806742e-38BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1D1YAF77e-73A0A1D1YAF7_9ARAE; Putative transcription factor bHLH107
STRINGXP_010271836.18e-59(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]